STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6YU05_ORYSJcDNA clone:J033023A22, full insert sequence. (652 aa)    
Predicted Functional Partners:
Q6ZFX8_ORYSJ
Os02g0710900 protein.
    
 0.804
Q5NAK8_ORYSJ
cDNA clone:J033050N08, full insert sequence.
    
 0.780
Q0JGJ6_ORYSJ
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.697
A0A0P0WFP5
Os04g0647300 protein.
    
 0.623
Q69MK0_ORYSJ
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
  0.612
KIN14I
Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division.
     
 0.592
Q8LRG9_ORYSJ
cDNA clone:J023036C23, full insert sequence.
    
 0.586
GCN5
Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity).
    
 0.521
Q84SZ4_ORYSJ
cDNA clone:J013132N21, full insert sequence.
    
 0.521
Q0JHK4_ORYSJ
Os01g0858500 protein.
    
 0.520
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.