Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0P0VQB6 | A0A0P0WNF9 | A0A0P0VQB6 | A0A0P0WNF9 | Os02g0782800 protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.742 |
A0A0P0VQB6 | A0A0P0XPV0 | A0A0P0VQB6 | A0A0P0XPV0 | Os02g0782800 protein. | Os09g0544500 protein. | 0.682 |
A0A0P0VQB6 | Q656M9_ORYSJ | A0A0P0VQB6 | Q656M9 | Os02g0782800 protein. | Os06g0255200 protein. | 0.935 |
A0A0P0VQB6 | Q6K7A1_ORYSJ | A0A0P0VQB6 | Q6K7A1 | Os02g0782800 protein. | cDNA clone:J013042H05, full insert sequence. | 0.682 |
A0A0P0VQB6 | Q6YXC6_ORYSJ | A0A0P0VQB6 | Q6YXC6 | Os02g0782800 protein. | Os02g0572600 protein. | 0.975 |
A0A0P0VQB6 | Q7XUC9_ORYSJ | A0A0P0VQB6 | Q7XUC9 | Os02g0782800 protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.742 |
A0A0P0VQB6 | Q8H060_ORYSJ | A0A0P0VQB6 | Q8H060 | Os02g0782800 protein. | Retinoblastoma-binding protein, putative, expressed. | 0.804 |
A0A0P0VQB6 | SE14 | A0A0P0VQB6 | Q10RP4 | Os02g0782800 protein. | Lysine-specific demethylase SE14; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. | 0.792 |
A0A0P0VQF0 | A0A0P0WNF9 | A0A0P0VQF0 | A0A0P0WNF9 | Os02g0784100 protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.742 |
A0A0P0VQF0 | A0A0P0XPV0 | A0A0P0VQF0 | A0A0P0XPV0 | Os02g0784100 protein. | Os09g0544500 protein. | 0.682 |
A0A0P0VQF0 | Q656M9_ORYSJ | A0A0P0VQF0 | Q656M9 | Os02g0784100 protein. | Os06g0255200 protein. | 0.935 |
A0A0P0VQF0 | Q6K7A1_ORYSJ | A0A0P0VQF0 | Q6K7A1 | Os02g0784100 protein. | cDNA clone:J013042H05, full insert sequence. | 0.682 |
A0A0P0VQF0 | Q6YXC6_ORYSJ | A0A0P0VQF0 | Q6YXC6 | Os02g0784100 protein. | Os02g0572600 protein. | 0.975 |
A0A0P0VQF0 | Q7XUC9_ORYSJ | A0A0P0VQF0 | Q7XUC9 | Os02g0784100 protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.742 |
A0A0P0VQF0 | Q8H060_ORYSJ | A0A0P0VQF0 | Q8H060 | Os02g0784100 protein. | Retinoblastoma-binding protein, putative, expressed. | 0.804 |
A0A0P0VQF0 | SE14 | A0A0P0VQF0 | Q10RP4 | Os02g0784100 protein. | Lysine-specific demethylase SE14; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. | 0.792 |
A0A0P0WNF9 | A0A0P0VQB6 | A0A0P0WNF9 | A0A0P0VQB6 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Os02g0782800 protein. | 0.742 |
A0A0P0WNF9 | A0A0P0VQF0 | A0A0P0WNF9 | A0A0P0VQF0 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Os02g0784100 protein. | 0.742 |
A0A0P0WNF9 | A0A0P0XPV0 | A0A0P0WNF9 | A0A0P0XPV0 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Os09g0544500 protein. | 0.968 |
A0A0P0WNF9 | Q5N7H4_ORYSJ | A0A0P0WNF9 | Q5N7H4 | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | Os01g0884500 protein. | 0.979 |
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