STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_26324Nucleolin 1; Involved in pre-rRNA processing and ribosome assembly. (572 aa)    
Predicted Functional Partners:
Q10LF8_ORYSJ
Nucleolar protein Nop56, putative, expressed.
   
 
 0.806
Q8H2U5_ORYSJ
Os07g0661800 protein.
   
 
 0.679
Q10SE5_ORYSJ
D111/G-patch domain-containing protein, putative, expressed.
   
 
 0.678
A0A0N7KGC5
Os02g0821800 protein.
   
 
 0.672
B7FA85_ORYSJ
cDNA, clone: J100055L06, full insert sequence.
   
 
 0.672
OsJ_24703
Eukaryotic translation initiation factor 4G; Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome; Belongs to the eukaryotic initiation factor 4G family.
   
 0.587
C3H43_ORYSJ
Zinc finger CCCH domain-containing protein 43.
   
 0.587
OJ1004_A05.11
Eukaryotic translation initiation factor isoform 4G-2; Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection; Belongs to the eukaryotic initiation factor 4G family.
   
 0.587
IF4G1_ORYSJ
Eukaryotic translation initiation factor isoform 4G-1; Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.
   
 0.587
OsJ_012997
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the Dus family. Dus3 subfamily.
   
  
 0.552
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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