STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6Z1C1_ORYSJcDNA clone:001-028-G11, full insert sequence. (481 aa)    
Predicted Functional Partners:
Q656M9_ORYSJ
Os06g0255200 protein.
    
 
 0.692
A0A0P0V621
Os01g0648500 protein.
    
 
 0.599
Q5W6Q8_ORYSJ
cDNA clone:001-101-F01, full insert sequence.
    
 
 0.599
A0A0P0WNF9
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.577
Q7XUC9_ORYSJ
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.577
Q5TKQ2_ORYSJ
Os05g0540800 protein.
    
 
 0.565
Q2R2A5_ORYSJ
Transcription factor jumonji, putative, expressed.
    
 
 0.432
Q75LR4_ORYSJ
Transcription factor jumonji, putative, expressed.
    
 
 0.432
Q0D8F2_ORYSJ
Os07g0164100 protein.
    
 0.410
A0A0P0VNC6
Os02g0689800 protein.
   
 
 0.404
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.