STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6Z2E1_ORYSJPectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. (394 aa)    
Predicted Functional Partners:
A0A0P0XVJ6
Pectate lyase.
  
 
 0.897
Q8RYR4_ORYSJ
Pectate lyase.
  
 
 0.888
A0A0P0VA72
Pectate lyase.
  
 
 0.877
A0A0P0XED9
Pectate lyase.
   
 
 0.869
A0A0P0W6X3
Os04g0137100 protein.
   
 
 0.848
A0A0P0W752
Os04g0137001 protein.
   
 
 0.848
Q5VP91_ORYSJ
Pectate lyase.
  
 
 0.813
A0A0P0VL78
Os02g0596100 protein.
    
 0.808
A0A0P0WS98
Pectate lyase.
  
 
 0.789
Q0DJF3_ORYSJ
Pectate lyase.
  
 
 0.788
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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