STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6ZC73_ORYSJOs08g0109000 protein. (401 aa)    
Predicted Functional Partners:
Q5JKZ9_ORYSJ
Os01g0952600 protein; Belongs to the glycosyl hydrolase 2 family.
     
 0.664
Q0J5Q6_ORYSJ
cDNA clone:J013111E20, full insert sequence.
    
  0.595
A0A0P0XY01
Os11g0104866 protein.
    
 
 0.554
A0A0P0Y653
Os12g0104766 protein.
    
 
 0.554
CLH2_ORYSJ
Clathrin heavy chain 2; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
    
 
 0.554
CLH1_ORYSJ
Clathrin heavy chain 1; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
    
 
 0.554
Q0DIG5_ORYSJ
Os05g0391500 protein.
     
 0.543
Q84YP7_ORYSJ
cDNA clone:J033064G16, full insert sequence.
    
 
 0.511
Q653Y7_ORYSJ
Os06g0663900 protein.
    
 0.454
Q6Z2K0_ORYSJ
cDNA clone:J023029C05, full insert sequence; Belongs to the small GTPase superfamily. Arf family.
    
 0.437
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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