STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPS2-2Solanesyl-diphosphate synthase 2, chloroplastic; Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation. Geranyl diphosphate is the preferred substrate; Belongs to the FPP/GGPP synthase family. (403 aa)    
Predicted Functional Partners:
FPPS1
cDNA clone:001-036-D06, full insert sequence; Belongs to the FPP/GGPP synthase family.
    
 0.974
CHLP
Geranylgeranyl diphosphate reductase, chloroplastic; Catalyzes the reduction of geranylgeranyl diphosphate to phytyl diphosphate, providing phytol for both tocopherol and chlorophyll synthesis.
  
 0.969
Q65XM9_ORYSJ
cDNA clone:J023072A14, full insert sequence; Belongs to the FPP/GGPP synthase family.
    
 0.960
PSY1
Phytoene synthase 1, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis.
  
 0.957
PSY2
Phytoene synthase 2, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis.
  
 0.956
Q7XI92_ORYSJ
cDNA clone:J023007O22, full insert sequence; Belongs to the FPP/GGPP synthase family.
  
 
 
0.951
SPS1-2
Solanesyl-diphosphate synthase 1, mitochondrial; Involved in the supply of solanesyl diphosphate for ubiquinone-9 (UQ-9) biosynthesis in mitochondria. Farnesyl diphosphate is the preferred substrate.
  
  
0.949
Q6ET88_ORYSJ
cDNA clone:001-204-C07, full insert sequence; Belongs to the FPP/GGPP synthase family.
  
  
0.948
PSY3
Phytoene synthase 3, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis. May play a role in regulating carotenoid flux in response to abiotic stress in roots. May control flux to carotenoid precursors that are required for abiotic stress-induced abscisic acid (ABA) formation in roots.
  
 0.944
SPS3
Probable solanesyl-diphosphate synthase 3, chloroplastic; Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation.
  
  
0.941
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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