STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7F0H7_ORYSJPectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. (566 aa)    
Predicted Functional Partners:
A0A0P0XVJ6
Pectate lyase.
  
  
  0.878
Q8RYR4_ORYSJ
Pectate lyase.
  
  
  0.874
A0A0N7KG60
Os02g0770700 protein.
   
 
 0.862
A0A0P0VA72
Pectate lyase.
  
  
  0.839
Q0DEM8_ORYSJ
Pectate lyase.
  
  
 0.822
Q75IA9_ORYSJ
Protein kinase family protein, putative, expressed.
   
  
 0.766
Q6ZC35_ORYSJ
Os08g0468400 protein.
   
  
 0.750
A0A0P0WS98
Pectate lyase.
  
  
 0.723
Q5VP91_ORYSJ
Pectate lyase.
  
  
 0.712
B9G290_ORYSJ
Os09g0242300 protein.
   
 
 0.697
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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