STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7XJX7_ORYSJOs04g0643000 protein; Belongs to the cullin family. (731 aa)    
Predicted Functional Partners:
A0A0P0UYZ4
Os01g0185400 protein.
   
 0.938
CSN5
COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (By similarity). Involved in early response to iron deficiency (Probable).
    
 0.925
Q0DY92_ORYSJ
Os02g0708300 protein.
    
 0.919
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
    
 0.919
Q10SN3_ORYSJ
COP9 signalosome complex subunit 1, putative, expressed.
    
 0.914
C7IY94_ORYSJ
Os02g0169800 protein.
   
 0.912
Q6H4V4_ORYSJ
cDNA clone:J023003N20, full insert sequence.
   
 0.912
A0A0N7KJ29
Os04g0431200 protein.
    
 0.898
Q0JNL8_ORYSJ
Os01g0279200 protein.
   
 0.882
A0A0P0XGG0
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
    
 0.876
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.