STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7XR49_ORYSJUBX domain-containing protein. (459 aa)    
Predicted Functional Partners:
P0416G11.21-1
NPL4-like protein; May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. Belongs to the NPL4 family.
    
 0.966
PBD1
Proteasome subunit beta type-2; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity); Belongs to the peptidase T1B family.
    
  0.943
Q5JLH9_ORYSJ
Os01g0534800 protein.
  
 
 0.938
A0A0P0UY76
Os01g0144500 protein.
    
 0.925
A0A0P0VFH4
Os02g0181800 protein.
    
 0.925
A0A0P0WDV8
Os04g0577000 protein.
    
 0.925
A0A0P0XFK3
Os08g0413000 protein.
    
 0.886
B7E390_ORYSJ
cDNA clone:001-008-E02, full insert sequence; Belongs to the AAA ATPase family.
    
 0.886
Q0JC08_ORYSJ
Os04g0498800 protein; Belongs to the AAA ATPase family.
    
 0.886
Q10RP0_ORYSJ
Cell division cycle protein 48, putative, expressed.
    
 0.886
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.