STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7XUX5_ORYSJPeptidylprolyl isomerase. (525 aa)    
Predicted Functional Partners:
BOP1
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.845
PES
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.785
B7EZK3_ORYSJ
cDNA clone:002-114-D09, full insert sequence.
   
 
 0.740
OsJ_01990
Ribosome production factor 2 homolog.
   
 
 0.740
Q0DES6_ORYSJ
cDNA clone:J023145C13, full insert sequence.
   
   0.734
A0A0P0XVR4
Os10g0495600 protein; Belongs to the RNA polymerase beta chain family.
   
 
 0.711
Q53MQ7_ORYSJ
cDNA clone:J013157I04, full insert sequence.
   
    0.693
A0A0N7KG11
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.688
A0A0P0W1L4
Os03g0655300 protein.
   
 0.688
OJ1014_E02.2
Uncharacterized protein Os08g0359500; Belongs to the p23/wos2 family.
   
 0.688
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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