STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMT3-1Ammonium transporter 3 member 1; Involved in ammonium transport. (498 aa)    
Predicted Functional Partners:
GLB
Nitrogen regulatory protein P-II homolog; Participates in sensing carbon and organic nitrogen status and regulates some steps of primary carbon and nitrogen metabolism.
  
 0.988
GLN2
Glutamine synthetase, chloroplastic; The light-modulated chloroplast enzyme, encoded by a nuclear gene and expressed primarily in leaves, is responsible for the reassimilation of the ammonia generated by photorespiration. Belongs to the glutamine synthetase family.
  
  
 0.654
GLN1-2
Glutamine synthetase cytosolic isozyme 1-2; High-affinity glutamine synthetase. May play a role in the primary assimilation of ammonium taken up by roots.
  
  
 0.613
GLN1-3
Glutamine synthetase cytosolic isozyme 1-3; Belongs to the glutamine synthetase family.
  
  
 0.613
GLN1-1
Glutamine synthetase cytosolic isozyme 1-1; High-affinity glutamine synthetase. May be a major component of the cytosolic glutamine synthetic pathway in leaf blades.
  
  
 0.578
Q0IX96_ORYSJ
cDNA clone:J013075P13, full insert sequence; Belongs to the glutamine synthetase family.
  
  
 0.531
PSD2
Phosphatidylserine decarboxylase 2 alpha chain; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.
     
 0.459
A0A0N7KLZ5
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.438
Q10S34_ORYSJ
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.438
P0610E02.32
Putative aconitate hydratase, cytoplasmic; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.438
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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