STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q8LIL4_ORYSJGuanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (446 aa)    
Predicted Functional Partners:
Q10QM5_ORYSJ
Ras-related protein Rab-6A, putative, expressed.
   
 0.947
Q8H4Q9_ORYSJ
Os07g0496000 protein.
   
 0.947
Q0DGE4_ORYSJ
cDNA clone:001-102-H02, full insert sequence.
    
 0.916
Q5JLU1_ORYSJ
cDNA clone:J013000E15, full insert sequence.
    
 0.916
Q5N7Z9_ORYSJ
cDNA clone:006-211-E06, full insert sequence.
    
 0.916
Q75IJ1_ORYSJ
cDNA clone:001-040-A09, full insert sequence.
    
 0.916
CMT1
DNA (cytosine-5)-methyltransferase CMT1; Involved in CpXpG DNA methylation (By similarity). May not play a major role in maintaining CpXpG methylation (Probable). Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
 0.858
A0A0P0WYU9
Os06g0600800 protein.
    
 0.858
CMT3
DNA (cytosine-5)-methyltransferase CMT3; Involved in CpXpG DNA methylation. Plays a critical role in the maintenance of CpXpG DNA methylation and suppression of a wide spectrum of transposable element (TE) activities. Required for proper plant development in reproductive stage.
    
 0.858
RIC1
Ras-related protein RIC1; Possesses GTPase activity; Belongs to the small GTPase superfamily. Rab family.
    
 0.858
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.