STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q8RYM1_ORYSJOs01g0635400 protein. (344 aa)    
Predicted Functional Partners:
Q10R44_ORYSJ
Nucleoporin family protein, putative, expressed.
   
 0.989
Q5VNZ1_ORYSJ
cDNA clone:001-125-A12, full insert sequence.
   
 0.989
A0A0P0Y7I3
Os12g0166000 protein.
   
 0.983
B9GC17_ORYSJ
Os12g0165900 protein.
   
 0.983
Q8LQM0_ORYSJ
cDNA clone:001-017-D01, full insert sequence.
    
 0.980
A0A0P0VL78
Os02g0596100 protein.
   
 0.976
Q6YVE2_ORYSJ
cDNA clone:001-023-C01, full insert sequence.
   
 0.953
Q6ZBS9_ORYSJ
cDNA clone:J013156C15, full insert sequence.
  
  
 
0.940
A0A0P0VGQ0
Os02g0230300 protein.
   
 0.931
A0A0P0W409
Os03g0788250 protein.
   
 0.931
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.