STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B1078G07.38Probable membrane-associated 30 kDa protein, chloroplastic; Belongs to the PspA/IM30 family. (317 aa)    
Predicted Functional Partners:
Q5ZEK1_ORYSJ
Os01g0151200 protein.
   
 
 0.567
A0A0P0W5Y9
Os03g0844700 protein.
   
 
 0.517
THF1
Protein THYLAKOID FORMATION1, chloroplastic; Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development (By similarity); Belongs to the THF1 family.
      
 0.499
Q6YXY1_ORYSJ
Os02g0137600 protein.
      
 0.483
Q10BD0_ORYSJ
cDNA clone:J013043N03, full insert sequence.
      
 0.469
Q6I5X7_ORYSJ
cDNA clone:J013026B01, full insert sequence.
      
 0.451
Q67TZ5_ORYSJ
cDNA clone:J023039M22, full insert sequence.
      
 0.446
TATA
Sec-independent protein translocase protein TATA, chloroplastic; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.
   
  
 0.437
Q6K8V9_ORYSJ
Os02g0784900 protein.
      
 0.435
Q0J0Z5_ORYSJ
Os09g0474300 protein.
    
 
 0.412
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.