STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_03819Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)    
Predicted Functional Partners:
A0A0P0V7B9
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
B7F947_ORYSJ
cDNA, clone: J075009F20, full insert sequence.
   
 0.999
B9FC62_ORYSJ
Os04g0585300 protein.
   
 0.999
Q0DQG5_ORYSJ
Os03g0598200 protein.
   
 0.999
Q5N7Y0_ORYSJ
Os01g0911000 protein.
   
 0.999
KMK0024M20.35
cDNA clone:006-212-G11, full insert sequence.
   
 0.999
Q657Z6_ORYSJ
cDNA clone:J013109E04, full insert sequence.
   
 0.999
Q6K882_ORYSJ
cDNA clone:J033070F10, full insert sequence.
   
 0.999
Q6YW01_ORYSJ
cDNA clone:001-124-C09, full insert sequence.
   
 0.999
Q7XDT2_ORYSJ
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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