STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOAT1cDNA clone:J033058D09, full insert sequence. (522 aa)    
Predicted Functional Partners:
IRX9
Probable beta-1,4-xylosyltransferase IRX9; Probable beta-1,4-xylosyltransferase involved in xylan biosynthesis in cell walls; Belongs to the glycosyltransferase 43 family.
      
 0.577
Q654Y6_ORYSJ
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
      
 0.478
Q688J5_ORYSJ
Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.
      
 0.478
Q75L39_ORYSJ
cDNA clone:J023039O14, full insert sequence.
      
 0.478
Q8LNI5_ORYSJ
Shaggy-related protein kinase theta, putative, expressed; Belongs to the protein kinase superfamily.
      
 0.473
A0A0P0WAL1
Os04g0429850 protein.
      
 0.469
A0A0P0XX73
Os10g0536450 protein.
      
 0.469
Q10DD6_ORYSJ
Homeodomain protein JUBEL1, putative, expressed.
      
 0.469
Q7F1B4_ORYSJ
cDNA clone:J013108L21, full insert sequence.
      
 0.444
OBGC1
Probable GTP-binding protein OBGC1, chloroplastic; Probable GTP-binding protein that plays a crucial role in chloroplast development and is required for leaf greening during plant growth; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
      
 0.412
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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