STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsJ_004032Protein BUD31 homolog 1. (145 aa)    
Predicted Functional Partners:
Q6K5F4_ORYSJ
cDNA clone:002-107-H03, full insert sequence.
   
 0.955
OsJ_019459
Zinc finger CCCH domain-containing protein 40.
   
 0.930
OsJ_23846
Zinc finger CCCH domain-containing protein 49.
   
 0.930
SKIPB
SNW/SKI-interacting protein B.
    
 0.928
SKIPA
SNW/SKI-interacting protein A; Acts as positive regulator of drought and salt tolerance. Acts as positive regulator of cell viability. Belongs to the SNW family.
    
 0.928
Q0DRG6_ORYSJ
Os03g0387000 protein.
    
  0.926
Q0JLQ1_ORYSJ
Os01g0582400 protein.
    
 0.909
OsCyp3
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.906
A0A0P0Y041
Os11g0186600 protein.
    
 0.888
C7J4B5_ORYSJ
Os06g0523900 protein.
    
 0.888
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.