STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q9ARP1_ORYSJcDNA clone:001-008-F11, full insert sequence. (198 aa)    
Predicted Functional Partners:
Q0DYE1_ORYSJ
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.684
Q10BA2_ORYSJ
cDNA clone:002-145-E10, full insert sequence.
   
 
 0.684
Q5N9B3_ORYSJ
cDNA clone:J023026J02, full insert sequence.
   
 
 0.684
GYRB
DNA gyrase subunit B, chloroplastic/mitochondrial; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.
   
 
 0.684
GYRA
Probable DNA gyrase subunit A, chloroplastic/mitochondrial; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. Belongs to the type II topoisomerase GyrA/ParC subunit family.
   
 
 0.684
Q9LGX8_ORYSJ
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.684
Q0E297_ORYSJ
cDNA clone:J023104J24, full insert sequence.
  
 
  0.681
Q2QQ49_ORYSJ
Molybdenum cofactor biosynthesis protein 1 A, putative, expressed.
  
 
  0.681
Q7XTF2_ORYSJ
Os04g0460500 protein.
  
 
  0.681
Q8LNF2_ORYSJ
Thylakoid lumenal 17.4 kDa protein, chloroplast, putative, expressed.
   
  
 0.558
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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