STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q9AYD8_ORYSJAssociated with HOX family protein. (346 aa)    
Predicted Functional Partners:
A0A0N7KR07
Os09g0484300 protein.
    
 0.572
A0A0P0VMP6
Os02g0663550 protein.
    
  0.477
A0A0P0W7D2
Os04g0188800 protein.
    
  0.477
A0A0P0WA41
Os04g0409600 protein.
    
  0.477
A0A0P0X4G7
Os07g0264450 protein.
    
  0.477
A0A0P0XEE7
Os08g0316050 protein.
    
  0.477
A0A0P0XJP0
Os09g0105400 protein.
    
  0.477
A0A0P0XZX1
Os11g0201400 protein.
    
  0.477
A0A0P0Y523
Os11g0651632 protein.
    
  0.477
Q2R9B1_ORYSJ
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.477
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.