STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q9LHZ0_ORYSJcDNA clone:001-039-H06, full insert sequence. (259 aa)    
Predicted Functional Partners:
MTK1
Methylthioribose kinase 1; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
     
 0.961
OsSPDS2
cDNA clone:J013105J05, full insert sequence; Belongs to the spermidine/spermine synthase family.
     
 0.942
SPDSYN1
Spermidine synthase 1; Belongs to the spermidine/spermine synthase family.
     
 0.942
A0A0P0WIY3
Os05g0196600 protein.
     
 0.940
Q7XQ85_ORYSJ
cDNA clone:002-105-C04, full insert sequence.
     
 0.940
IDI2
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
     
 0.905
MTK2
Methylthioribose kinase 2; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
     
 0.902
ACC1
1-aminocyclopropane-1-carboxylate synthase 1; Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants.
     
 0.885
A0A0P0VH43
Os02g0254700 protein.
     
 0.868
A0A0P0Y1Y5
Adenosylhomocysteinase.
   
 
 0.853
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.