STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC1Arginine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (702 aa)    
Predicted Functional Partners:
ARG1
Arginase 1, mitochondrial; Catalyzes the hydrolysis of L-arginine to urea and L- ornithine. The latter can be utilized in the urea cycle or as a precursor for the synthesis of both polyamines and proline (By similarity).
  
 
 0.917
B7FA89_ORYSJ
cDNA, clone: J100056P20, full insert sequence.
    
 0.875
A0A0N7KTF0
Os11g0708600 protein.
    
 0.854
SPDSYN1
Spermidine synthase 1; Belongs to the spermidine/spermine synthase family.
    
 0.815
OJ1212_C06.17
Putative nitric oxide synthase; Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOA1 subfamily.
     
 0.780
A0A0P0VH43
Os02g0254700 protein.
    
 0.761
Q6EQJ6_ORYSJ
Os02g0237100 protein.
    
 0.761
OsSPDS2
cDNA clone:J013105J05, full insert sequence; Belongs to the spermidine/spermine synthase family.
    
 0.761
ADC2
Arginine decarboxylase 2.
  
  
0.704
OsASL1
Argininosuccinate lyase.
     
 0.700
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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