STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0003PFAM: thioesterase superfamily protein. (311 aa)    
Predicted Functional Partners:
Msed_0004
TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase.
       0.798
Msed_0005
PFAM: protein of unknown function DUF62.
       0.791
Msed_0006
TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase.
  
    0.791
Msed_0007
TIGRFAM: putative RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein.
  
    0.615
Msed_0008
Hypothetical protein.
       0.595
Msed_0264
PFAM: thioesterase superfamily protein.
    
 0.487
Msed_0273
PFAM: thioesterase superfamily protein.
    
 0.487
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
       0.465
Msed_2058
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein.
 
 
 
 0.407
Msed_0010
PFAM: histidine triad (HIT) protein.
       0.406
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.