Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msed_0003 | Msed_0004 | Msed_0003 | Msed_0004 | PFAM: thioesterase superfamily protein. | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | 0.792 |
Msed_0003 | Msed_0005 | Msed_0003 | Msed_0005 | PFAM: thioesterase superfamily protein. | PFAM: protein of unknown function DUF62. | 0.783 |
Msed_0003 | Msed_0006 | Msed_0003 | Msed_0006 | PFAM: thioesterase superfamily protein. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.786 |
Msed_0003 | Msed_0008 | Msed_0003 | Msed_0008 | PFAM: thioesterase superfamily protein. | Hypothetical protein. | 0.590 |
Msed_0004 | Msed_0003 | Msed_0004 | Msed_0003 | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | PFAM: thioesterase superfamily protein. | 0.792 |
Msed_0004 | Msed_0005 | Msed_0004 | Msed_0005 | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | PFAM: protein of unknown function DUF62. | 0.808 |
Msed_0004 | Msed_0006 | Msed_0004 | Msed_0006 | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.842 |
Msed_0004 | Msed_0008 | Msed_0004 | Msed_0008 | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | Hypothetical protein. | 0.611 |
Msed_0005 | Msed_0003 | Msed_0005 | Msed_0003 | PFAM: protein of unknown function DUF62. | PFAM: thioesterase superfamily protein. | 0.783 |
Msed_0005 | Msed_0004 | Msed_0005 | Msed_0004 | PFAM: protein of unknown function DUF62. | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | 0.808 |
Msed_0005 | Msed_0006 | Msed_0005 | Msed_0006 | PFAM: protein of unknown function DUF62. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.800 |
Msed_0005 | Msed_0008 | Msed_0005 | Msed_0008 | PFAM: protein of unknown function DUF62. | Hypothetical protein. | 0.614 |
Msed_0006 | Msed_0003 | Msed_0006 | Msed_0003 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: thioesterase superfamily protein. | 0.786 |
Msed_0006 | Msed_0004 | Msed_0006 | Msed_0004 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | TIGRFAM: nicotinamide-nucleotide adenylyltransferase; PFAM: cytidylyltransferase. | 0.842 |
Msed_0006 | Msed_0005 | Msed_0006 | Msed_0005 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: protein of unknown function DUF62. | 0.800 |
Msed_0006 | Msed_0008 | Msed_0006 | Msed_0008 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Hypothetical protein. | 0.621 |
Msed_0006 | Msed_0721 | Msed_0006 | Msed_0721 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Protein of unknown function DUF265; Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency; Belongs to the THEP1 NTPase family. | 0.913 |
Msed_0006 | Msed_1412 | Msed_0006 | Msed_1412 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
Msed_0006 | folE | Msed_0006 | Msed_1611 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: GTP cyclohydrolase I. | 0.800 |
Msed_0006 | gch3 | Msed_0006 | Msed_0049 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | GTP cyclohydrolase IIa; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.829 |
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