Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msed_0006 | Msed_1412 | Msed_0006 | Msed_1412 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
Msed_0006 | gch3 | Msed_0006 | Msed_0049 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | GTP cyclohydrolase IIa; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.829 |
Msed_0006 | hjc | Msed_0006 | Msed_1926 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. | 0.457 |
Msed_0006 | ndk | Msed_0006 | Msed_0029 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.903 |
Msed_0044 | Msed_0045 | Msed_0044 | Msed_0045 | Putative membrane protein. | Hypothetical protein. | 0.562 |
Msed_0044 | Msed_0046 | Msed_0044 | Msed_0046 | Putative membrane protein. | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.515 |
Msed_0044 | Msed_0047 | Msed_0044 | Msed_0047 | Putative membrane protein. | TIGRFAM: riboflavin synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase. | 0.515 |
Msed_0044 | Msed_0050 | Msed_0044 | Msed_0050 | Putative membrane protein. | PFAM: amidohydrolase. | 0.538 |
Msed_0044 | gch3 | Msed_0044 | Msed_0049 | Putative membrane protein. | GTP cyclohydrolase IIa; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.515 |
Msed_0044 | ribH | Msed_0044 | Msed_0048 | Putative membrane protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.515 |
Msed_0045 | Msed_0044 | Msed_0045 | Msed_0044 | Hypothetical protein. | Putative membrane protein. | 0.562 |
Msed_0045 | Msed_0046 | Msed_0045 | Msed_0046 | Hypothetical protein. | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.648 |
Msed_0045 | Msed_0047 | Msed_0045 | Msed_0047 | Hypothetical protein. | TIGRFAM: riboflavin synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase. | 0.648 |
Msed_0045 | Msed_0050 | Msed_0045 | Msed_0050 | Hypothetical protein. | PFAM: amidohydrolase. | 0.648 |
Msed_0045 | gch3 | Msed_0045 | Msed_0049 | Hypothetical protein. | GTP cyclohydrolase IIa; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity; Belongs to the archaeal-type GTP cyclohydrolase family. | 0.648 |
Msed_0045 | ribH | Msed_0045 | Msed_0048 | Hypothetical protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.648 |
Msed_0046 | Msed_0044 | Msed_0046 | Msed_0044 | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Putative membrane protein. | 0.515 |
Msed_0046 | Msed_0045 | Msed_0046 | Msed_0045 | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | Hypothetical protein. | 0.648 |
Msed_0046 | Msed_0047 | Msed_0046 | Msed_0047 | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | TIGRFAM: riboflavin synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase. | 0.908 |
Msed_0046 | Msed_0050 | Msed_0046 | Msed_0050 | PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase. | PFAM: amidohydrolase. | 0.835 |
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