Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msed_0126PFAM: triphosphoribosyl-dephospho-CoA protein. (295 aa)    
Predicted Functional Partners:
Msed_0125
Conserved hypothetical protein.
 
     0.957
Msed_0124
PFAM: protein of unknown function DUF1464.
 
     0.956
Msed_0127
Hypothetical protein.
       0.887
Msed_0381
Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase.
  
  
 0.830
Msed_0631
TIGRFAM: dihydropteroate synthase-related protein.
 
     0.730
Msed_1616
Beta-ribofuranosylaminobenzene 5'-phosphate synthase; Catalyzes the condensation of 4-aminobenzoate (pABA) with 5- phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta- ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).
 
     0.726
Msed_0129
Trehalose synthase (ADP-glucose); PFAM: glycosyl transferase, group 1.
  
    0.652
Msed_0128
Hypothetical protein.
       0.651
Msed_0006
TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase.
 
     0.554
Msed_0123
Hypothetical protein.
       0.549
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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