STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0154PFAM: AMMECR1 domain protein. (221 aa)    
Predicted Functional Partners:
Msed_2139
PFAM: protein of unknown function DUF52; Belongs to the MEMO1 family.
    0.994
Msed_0155
PFAM: protein of unknown function DUF82.
 
     0.949
Msed_1999
PFAM: Radical SAM domain protein.
     0.946
Msed_0156
Hypothetical protein.
       0.887
Msed_0157
PFAM: protein of unknown function DUF814.
 
     0.812
Msed_0153
TIGRFAM: glutaredoxin-like domain protein.
       0.787
Msed_0152
Hypothetical protein.
       0.583
Msed_1399
PFAM: CoA-binding domain protein.
       0.514
Msed_0729
Endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2.
       0.453
Msed_1730
PFAM: protein of unknown function DUF373.
       0.453
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.