Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Msed_0177 | Msed_0178 | Hypothetical protein. | Hypothetical protein. | 0.798 |
Msed_0177 | Msed_0179 | Hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase. | 0.786 |
Msed_0177 | Msed_0180 | Hypothetical protein. | PFAM: protein of unknown function UPF0126. | 0.723 |
Msed_0177 | Msed_0181 | Hypothetical protein. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.480 |
Msed_0178 | Msed_0177 | Hypothetical protein. | Hypothetical protein. | 0.798 |
Msed_0178 | Msed_0179 | Hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase. | 0.794 |
Msed_0178 | Msed_0180 | Hypothetical protein. | PFAM: protein of unknown function UPF0126. | 0.723 |
Msed_0178 | Msed_0181 | Hypothetical protein. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.480 |
Msed_0179 | Msed_0177 | PFAM: ABC transporter related; SMART: AAA ATPase. | Hypothetical protein. | 0.786 |
Msed_0179 | Msed_0178 | PFAM: ABC transporter related; SMART: AAA ATPase. | Hypothetical protein. | 0.794 |
Msed_0179 | Msed_0180 | PFAM: ABC transporter related; SMART: AAA ATPase. | PFAM: protein of unknown function UPF0126. | 0.723 |
Msed_0179 | Msed_0181 | PFAM: ABC transporter related; SMART: AAA ATPase. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.482 |
Msed_0180 | Msed_0177 | PFAM: protein of unknown function UPF0126. | Hypothetical protein. | 0.723 |
Msed_0180 | Msed_0178 | PFAM: protein of unknown function UPF0126. | Hypothetical protein. | 0.723 |
Msed_0180 | Msed_0179 | PFAM: protein of unknown function UPF0126. | PFAM: ABC transporter related; SMART: AAA ATPase. | 0.723 |
Msed_0180 | Msed_0181 | PFAM: protein of unknown function UPF0126. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.510 |
Msed_0181 | Msed_0177 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Hypothetical protein. | 0.480 |
Msed_0181 | Msed_0178 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Hypothetical protein. | 0.480 |
Msed_0181 | Msed_0179 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | PFAM: ABC transporter related; SMART: AAA ATPase. | 0.482 |
Msed_0181 | Msed_0180 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | PFAM: protein of unknown function UPF0126. | 0.510 |