STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0192Hypothetical protein. (104 aa)    
Predicted Functional Partners:
Msed_1968
Phosphate uptake regulator, PhoU; PFAM: SpoVT/AbrB domain protein; PhoU family protein.
  
  
 0.767
htpX
Heat shock protein, Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; Belongs to the peptidase M48B family.
  
  
 0.741
Msed_0191
PFAM: ornithine cyclodeaminase/mu-crystallin.
       0.677
Msed_0190
Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II.
       0.599
Msed_1202
PFAM: regulatory protein, AsnC/Lrp family.
  
  
 0.526
Msed_1209
PFAM: regulatory protein, AsnC/Lrp family.
  
  
 0.526
Msed_0767
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator.
  
  
 0.516
Msed_1430
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
    
   0.457
Msed_0974
Hypothetical protein.
  
  
 0.407
Msed_1261
TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B.
   
    0.402
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.