STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0255PFAM: General substrate transporter; major facilitator superfamily MFS_1. (395 aa)    
Predicted Functional Partners:
Msed_0860
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.697
Msed_0416
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.679
Msed_0467
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.669
Msed_0254
PFAM: major facilitator superfamily MFS_1.
       0.661
Msed_0463
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.619
Msed_0993
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.609
Msed_1772
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.608
Msed_1117
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.602
Msed_0866
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
  
     0.558
tmcA-2
Protein of unknown function DUF699, ATPase putative; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
   
   0.553
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.