STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0313PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin. (600 aa)    
Predicted Functional Partners:
Msed_1369
Physarolisin II, Serine peptidase, MEROPS family S53; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.705
Msed_0312
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
       0.584
Msed_1035
PFAM: phosphoesterase.
  
     0.537
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
 
   
 0.530
Msed_0972
PFAM: major facilitator superfamily MFS_1.
  
     0.522
Msed_0376
Conserved hypothetical protein.
  
     0.515
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
     0.513
Msed_0254
PFAM: major facilitator superfamily MFS_1.
  
     0.474
Msed_1010
PFAM: phosphoesterase.
  
     0.471
Msed_0800
PFAM: protein of unknown function DUF929.
  
     0.457
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.