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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msed_0320PFAM: cytochrome c oxidase, subunit II. (147 aa)    
Predicted Functional Partners:
Msed_0324
PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 0.998
Msed_0290
PFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 0.997
Msed_0291
PFAM: Cytochrome b/b6, N-terminal domain.
 
 0.993
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.992
Msed_0321
PFAM: Cytochrome b/b6, N-terminal domain.
 
 
 0.987
Msed_0485
PFAM: cytochrome c oxidase, subunit I.
 
 0.972
Msed_0570
PFAM: cytochrome c oxidase, subunit I.
 
 0.972
foxA
Cytochrome c oxidase, subunit I; This soxB-like sequence appears to have a role in Fe(II) oxidation; PFAM: cytochrome c oxidase, subunit I.
 
 0.971
Msed_2032
PFAM: cytochrome c oxidase, subunit I.
 
 0.968
Msed_1898
PFAM: respiratory-chain NADH dehydrogenase, subunit 1.
  
 0.963
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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