STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0335PFAM: von Willebrand factor, type A. (394 aa)    
Predicted Functional Partners:
Msed_2088
Protoporphyrin IX magnesium-chelatase; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase.
  
 
 0.775
Msed_0336
PFAM: Enoyl-CoA hydratase/isomerase.
       0.773
Msed_0332
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit.
  
    0.683
Msed_0333
FAD dependent oxidoreductase; PFAM: monooxygenase, FAD-binding; HI0933 family protein; FAD dependent oxidoreductase.
  
  
 0.664
Msed_0331
PFAM: electron transfer flavoprotein beta-subunit.
       0.610
Msed_0334
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.610
Msed_1797
PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
     0.570
Msed_0329
PFAM: protein kinase; SMART: serine/threonine protein kinase.
 
     0.525
Msed_0569
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.520
Msed_1490
FHA domain containing protein; PFAM: Forkhead-associated protein.
 
  
 0.518
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.