STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0344Carboxypeptidase Pfu, Metallo peptidase, MEROPS family M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (482 aa)    
Predicted Functional Partners:
Msed_0342
PFAM: amino acid-binding ACT domain protein; Belongs to the UPF0237 family.
       0.620
Msed_0343
PFAM: protein of unknown function DUF711.
       0.620
Msed_0395
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein.
  
    0.418
Msed_0440
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein.
  
    0.418
Msed_0340
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein.
  
    0.415
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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