STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0352Conserved hypothetical protein. (125 aa)    
Predicted Functional Partners:
Msed_0353
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
    0.961
Msed_0354
PFAM: SirA family protein.
  
  
 0.955
Msed_0351
PFAM: protein of unknown function DUF1641.
       0.942
Msed_0894
PFAM: SirA family protein.
 
  
 0.601
Msed_0780
PFAM: Rhodanese domain protein.
 
  
 0.571
Msed_0355
ATPase-like protein.
       0.543
Msed_1181
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
  
     0.511
Msed_1550
PFAM: DsrE family protein.
 
   
 0.490
Msed_1146
TIGRFAM: CRISPR-associated protein, Csa1 family.
  
     0.468
Msed_0372
PFAM: protein of unknown function DUF395, YeeE/YedE.
 
     0.449
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.