STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0376Conserved hypothetical protein. (382 aa)    
Predicted Functional Partners:
Msed_0374
PFAM: TQO small subunit DoxD; DoxX family protein.
       0.878
Msed_0375
Hypothetical protein.
       0.878
Msed_0372
PFAM: protein of unknown function DUF395, YeeE/YedE.
 
   
 0.778
Msed_0972
PFAM: major facilitator superfamily MFS_1.
 
     0.667
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
     0.667
Msed_1818
PFAM: Bacterio-opsin activator, HTH domain protein.
  
     0.640
Msed_0373
PFAM: SirA family protein.
 
     0.627
Msed_0369
PFAM: beta-lactamase domain protein.
 
   
 0.606
Msed_1086
PFAM: protein of unknown function DUF105.
 
     0.587
Msed_0377
Hypothetical protein.
 
     0.572
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.