STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0391Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3. (529 aa)    
Predicted Functional Partners:
Msed_0392
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.837
Msed_0393
Hypothetical protein.
       0.773
Msed_2033
Hypothetical protein.
 
     0.751
Msed_0772
PFAM: metallophosphoesterase.
 
     0.747
Msed_0875
PFAM: metallophosphoesterase.
 
     0.735
Msed_0876
Phosphoesterase; Related to the Icc protein.
 
     0.723
Msed_0441
ABC-type dipeptide transport system periplasmic component-like protein.
  
   
 0.647
Msed_0394
AMP-dependent synthetase and ligase; Catalyzes the ligation of coenzyme A (CoA) to 4- hydroxybutyrate (4HB). It can also use butyrate, valerate, propionate, acetate and 3-hydroxybutyrate (3HB) as substrates.
       0.615
Msed_1835
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
  
     0.497
Msed_0390
PFAM: carbonic anhydrase.
       0.495
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.