STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0393Hypothetical protein. (265 aa)    
Predicted Functional Partners:
Msed_0391
Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3.
       0.773
Msed_0392
PFAM: Rieske [2Fe-2S] domain protein.
       0.773
Msed_0394
AMP-dependent synthetase and ligase; Catalyzes the ligation of coenzyme A (CoA) to 4- hydroxybutyrate (4HB). It can also use butyrate, valerate, propionate, acetate and 3-hydroxybutyrate (3HB) as substrates.
  
  
 0.638
Msed_0390
PFAM: carbonic anhydrase.
  
    0.536
Msed_0929
PFAM: class II aldolase/adducin family protein.
   
 
 0.514
Msed_0505
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein.
    
 0.484
Msed_0395
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein.
       0.448
Msed_0300
PFAM: peptidase M1, membrane alanine aminopeptidase; PBS lyase HEAT domain protein repeat-containing protein.
   
 0.445
Msed_0575
PFAM: peptidase M1, membrane alanine aminopeptidase.
   
 0.445
Msed_0025
TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding.
  
 
  0.421
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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