STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0395PFAM: peptidase S9, prolyl oligopeptidase active site domain protein. (583 aa)    
Predicted Functional Partners:
Msed_1261
TIGRFAM: peptidase S26B, signal peptidase; PFAM: peptidase S24, S26A and S26B.
 
 
 0.604
Msed_0394
AMP-dependent synthetase and ligase; Catalyzes the ligation of coenzyme A (CoA) to 4- hydroxybutyrate (4HB). It can also use butyrate, valerate, propionate, acetate and 3-hydroxybutyrate (3HB) as substrates.
  
    0.567
Msed_1666
TIGRFAM: peptidase S26B, signal peptidase.
  
 
 0.552
Msed_1300
Prolyl oligopeptidase, Serine peptidase, MEROPS family S09A; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein.
  
 
 0.550
Msed_0396
PFAM: Thiolase.
  
   0.522
Msed_0392
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.513
Msed_1072
PFAM: Alpha/beta hydrolase fold-3 domain protein.
  
 
 0.457
Msed_1219
Pro-Hyp dipeptidase, Metallo peptidase, MEROPS family M38; PFAM: amidohydrolase; Amidohydrolase 3.
  
     0.456
Msed_0391
Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3.
       0.448
Msed_0393
Hypothetical protein.
       0.448
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.