STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0402PFAM: peptidase U62, modulator of DNA gyrase. (405 aa)    
Predicted Functional Partners:
Msed_0403
PFAM: peptidase U62, modulator of DNA gyrase.
 
   
 0.939
Msed_2006
PFAM: peptidase U62, modulator of DNA gyrase.
 
   
 0.656
Msed_1389
Zn-dependent protease-like protein.
  
     0.550
Msed_0157
PFAM: protein of unknown function DUF814.
   
    0.533
Msed_0404
Hypothetical protein.
       0.496
Msed_2007
PFAM: peptidase U62, modulator of DNA gyrase.
  
   
 0.493
Msed_0853
Rossmann fold nucleotide-binding protein-like protein.
 
    0.444
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.