STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0409Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3. (526 aa)    
Predicted Functional Partners:
Msed_1252
PFAM: major facilitator superfamily MFS_1.
 
     0.720
Msed_0419
PFAM: major facilitator superfamily MFS_1.
 
 
 0.709
Msed_0254
PFAM: major facilitator superfamily MFS_1.
 
 
 0.699
Msed_0258
PFAM: major facilitator superfamily MFS_1.
 
     0.684
Msed_1156
PFAM: protein of unknown function DUF395, YeeE/YedE.
 
     0.648
Msed_0361
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
  
     0.630
Msed_0461
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
  
     0.620
Msed_1359
PFAM: major facilitator superfamily MFS_1.
 
 
 0.616
Msed_1829
PFAM: glycosyl transferase, family 2.
 
   0.587
Msed_0408
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: Spore germination protein; amino acid permease-associated region; TC 2.A.3.
 
     0.585
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.