STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0423Anaerobic dehydrogenase typically selenocysteine-containing-like protein. (583 aa)    
Predicted Functional Partners:
Msed_0815
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 
 0.888
Msed_0305
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 
 0.871
Msed_0645
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE; TIGRFAM: MoaD family protein; PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein.
     
 0.765
Msed_1545
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.738
Msed_0424
Hypothetical protein.
       0.564
Msed_2024
Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein.
 
   
 0.547
Msed_0288
PFAM: Rieske [2Fe-2S] domain protein.
 
 
 
 0.522
Msed_1191
Rieske (2Fe-2S) domain protein; A soxNL-like fusion sequence appears to have a function related to Fe(II) oxidation; PFAM: Rieske [2Fe-2S] domain protein.
   
 
 0.520
soxL
Rieske (2Fe-2S) domain protein; Appears to have a function related to Fe(II) oxidation; PFAM: Rieske [2Fe-2S] domain protein.
 
 
 
 0.518
Msed_1899
TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.516
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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