STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0425Undecaprenyl-diphosphatase; PFAM: phosphoesterase, PA-phosphatase related. (203 aa)    
Predicted Functional Partners:
rpl6
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.912
Msed_2229
Hypothetical protein.
   
 
 0.832
Msed_1914
PFAM: V-type ATPase, 116 kDa subunit; Belongs to the V-ATPase 116 kDa subunit family.
   
 
 0.785
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
     
 0.775
Msed_1915
PFAM: Vacuolar H+-transporting two-sector ATPase, F subunit.
  
 
 0.763
Msed_1224
PFAM: AMP-dependent synthetase and ligase; regulatory protein, ArsR.
  
 0.739
Msed_0394
AMP-dependent synthetase and ligase; Catalyzes the ligation of coenzyme A (CoA) to 4- hydroxybutyrate (4HB). It can also use butyrate, valerate, propionate, acetate and 3-hydroxybutyrate (3HB) as substrates.
  
 0.728
Msed_0401
PFAM: AMP-dependent synthetase and ligase.
  
 0.728
Msed_1015
PFAM: AMP-dependent synthetase and ligase.
  
 0.728
Msed_1615
PFAM: AMP-dependent synthetase and ligase.
  
 0.728
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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