STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msed_0532Putative signal-transduction protein with CBS domains; TIGRFAM: ribosomal subunit interface protein; PFAM: CBS domain containing protein. (375 aa)    
Predicted Functional Partners:
Msed_0531
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.942
Msed_0838
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein.
 
    0.841
Msed_2115
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; protein of unknown function DUF293; Helix-turn-helix, type 11 domain protein.
  
    0.832
Msed_1479
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein.
 
    0.823
rps2
PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
   0.783
Msed_0766
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein.
 
   
0.751
Msed_0486
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein.
 
   
0.747
rpl37e
LSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
 
 
   0.737
rpl4
LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
 
 0.734
rpl21e
PFAM: ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
   0.733
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.