STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0544PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (610 aa)    
Predicted Functional Partners:
Msed_1466
PFAM: protein of unknown function DUF162.
 
 
 0.801
Msed_1463
PFAM: FAD linked oxidase domain protein.
 
  
 0.714
Msed_1274
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.706
Msed_2073
ATPase-like protein.
  
     0.705
Msed_0546
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
       0.702
Msed_0604
PFAM: amidohydrolase.
 
     0.686
Msed_0651
PFAM: type II secretion system protein.
 
   
 0.682
Msed_0769
PFAM: SMC domain protein.
 
     0.671
Msed_0592
S-layer domain-like protein.
 
     0.650
Msed_0817
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.650
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.