STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0548PFAM: protein of unknown function DUF1634. (127 aa)    
Predicted Functional Partners:
Msed_0549
PFAM: protein of unknown function DUF81.
 
  
 0.976
Msed_1447
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
 
     0.674
Msed_0588
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
 
     0.623
Msed_1080
Glutamine amidotransferase-like protein.
  
     0.582
Msed_1110
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB.
  
     0.581
Msed_0258
PFAM: major facilitator superfamily MFS_1.
  
     0.552
Msed_0409
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
 
     0.549
Msed_0419
PFAM: major facilitator superfamily MFS_1.
  
     0.537
Msed_1252
PFAM: major facilitator superfamily MFS_1.
  
     0.521
Msed_0569
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.516
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.