STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0554PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein. (339 aa)    
Predicted Functional Partners:
Msed_0553
PFAM: FAD linked oxidase domain protein.
 
 
 0.998
Msed_0552
PFAM: FAD linked oxidase domain protein.
 
 
 0.991
Msed_0436
D-lactate dehydrogenase; PFAM: FAD linked oxidase domain protein.
 
 
 0.954
Msed_1118
D-lactate dehydrogenase; PFAM: FAD linked oxidase domain protein.
 
 
 0.953
Msed_1042
PFAM: malate synthase.
  
 
 0.925
Msed_0256
Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
    
 0.907
Msed_2130
Phosphoglycolate phosphatase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
  0.905
Msed_0892
Transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II.
    
  0.900
Msed_2120
Putative transcriptional regulator, GntR family; PFAM: aminotransferase, class I and II.
    
  0.900
Msed_1466
PFAM: protein of unknown function DUF162.
 
 
 0.821
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.