STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0586Conserved hypothetical protein. (159 aa)    
Predicted Functional Partners:
Msed_1376
PFAM: binding-protein-dependent transport systems inner membrane component.
 
   
 0.858
Msed_0587
Hypothetical protein.
       0.768
Msed_0585
PFAM: protein of unknown function DUF125, transmembrane.
       0.754
Msed_1377
PFAM: ABC transporter related.
 
     0.739
Msed_0802
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.604
Msed_0569
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.582
Msed_0588
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; TC 2.A.3.
 
     0.568
Msed_0589
PFAM: PaREP1 domain containing protein.
       0.436
Msed_0790
PFAM: glycosyl transferase, family 2.
  
     0.428
Msed_2176
PFAM: Lysine exporter protein (LYSE/YGGA).
  
     0.426
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.