STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0604PFAM: amidohydrolase. (373 aa)    
Predicted Functional Partners:
Msed_0603
Methyltransferase; PFAM: protein of unknown function Met10.
  
    0.943
Msed_0601
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
       0.736
Msed_2073
ATPase-like protein.
 
     0.714
Msed_0612
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.712
Msed_0817
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.705
Msed_1274
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.704
Msed_0162
Hypothetical protein.
 
     0.689
Msed_0544
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.686
Msed_0822
PFAM: band 7 protein.
 
     0.673
Msed_1463
PFAM: FAD linked oxidase domain protein.
 
    0.669
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.