STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msed_0618ABC-type Na+ efflux pump permease component-like protein. (391 aa)    
Predicted Functional Partners:
Msed_0617
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.871
Msed_0619
PFAM: regulatory protein, AsnC/Lrp family.
 
     0.733
Msed_0616
Hypothetical protein.
       0.642
Msed_1584
PFAM: Glycosyltransferase 28, C-terminal domain.
 
     0.623
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.616
Msed_2082
SMART: AAA ATPase.
  
     0.555
Msed_0870
PFAM: ABC-2 type transporter.
 
  
 0.553
Msed_1110
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB.
 
     0.519
Msed_0667
SMART: von Willebrand factor, type A.
  
     0.510
Msed_1368
Hypothetical protein.
  
     0.477
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.